Download tissue networks, 0.05 prior probability

These files are identical to the files that were available at fntm.princeton.edu/download/ before June 15, 2016. The prior probability of a functional relationship is set to 0.05.

All networks are available as gzipped, tab-delimited text files. The file format is as follows:

        	Top Edges: the network is filtered to only include edges with evidence supporting a tissue-specific functional interaction
        	[entrez gene id 1][entrez gene id 2][posterior prob.]

        	Full network: the network is fully connected 
        	[entrez gene id 1][entrez gene id 2][posterior prob., with known edges set to 1][posterior prob.]
    	
TissueTop EdgesFull Network
adipose_tissueadipose_tissue_top.gzadipose_tissue.gz
adrenal_glandadrenal_gland_top.gzadrenal_gland.gz
amygdalaamygdala_top.gzamygdala.gz
anterior_olfactory_nucleusanterior_olfactory_nucleus_top.gzanterior_olfactory_nucleus.gz
appendage_girdle_complexappendage_girdle_complex_top.gzappendage_girdle_complex.gz
archicortexarchicortex_top.gzarchicortex.gz
ascending_colonascending_colon_top.gzascending_colon.gz
basal_ganglionbasal_ganglion_top.gzbasal_ganglion.gz
blood_vesselblood_vessel_top.gzblood_vessel.gz
bone_elementbone_element_top.gzbone_element.gz
bone_marrowbone_marrow_top.gzbone_marrow.gz
brainstembrainstem_top.gzbrainstem.gz
brainbrain_top.gzbrain.gz
brown_adipose_tissuebrown_adipose_tissue_top.gzbrown_adipose_tissue.gz
ca1_field_of_hippocampusca1_field_of_hippocampus_top.gzca1_field_of_hippocampus.gz
ca2_field_of_hippocampusca2_field_of_hippocampus_top.gzca2_field_of_hippocampus.gz
ca3_field_of_hippocampusca3_field_of_hippocampus_top.gzca3_field_of_hippocampus.gz
caecumcaecum_top.gzcaecum.gz
calcareous_toothcalcareous_tooth_top.gzcalcareous_tooth.gz
cardiac_ventriclecardiac_ventricle_top.gzcardiac_ventricle.gz
cartilage_elementcartilage_element_top.gzcartilage_element.gz
cartilage_tissuecartilage_tissue_top.gzcartilage_tissue.gz
caudate-putamencaudate-putamen_top.gzcaudate-putamen.gz
central_nervous_systemcentral_nervous_system_top.gzcentral_nervous_system.gz
cerebellar_cortexcerebellar_cortex_top.gzcerebellar_cortex.gz
cerebellum_external_granule_cell_layercerebellum_external_granule_cell_layer_top.gzcerebellum_external_granule_cell_layer.gz
cerebellum_internal_granule_cell_layercerebellum_internal_granule_cell_layer_top.gzcerebellum_internal_granule_cell_layer.gz
cerebellumcerebellum_top.gzcerebellum.gz
cerebral_cortexcerebral_cortex_top.gzcerebral_cortex.gz
chondrocraniumchondrocranium_top.gzchondrocranium.gz
choroid_plexuschoroid_plexus_top.gzchoroid_plexus.gz
ciliary_bodyciliary_body_top.gzciliary_body.gz
coagulating_glandcoagulating_gland_top.gzcoagulating_gland.gz
cochlear_duct_of_membranous_labyrinthcochlear_duct_of_membranous_labyrinth_top.gzcochlear_duct_of_membranous_labyrinth.gz
cochlear_modioluscochlear_modiolus_top.gzcochlear_modiolus.gz
cochleacochlea_top.gzcochlea.gz
collecting_duct_of_renal_tubulecollecting_duct_of_renal_tubule_top.gzcollecting_duct_of_renal_tubule.gz
coloncolon_top.gzcolon.gz
corneacornea_top.gzcornea.gz
corpus_callosumcorpus_callosum_top.gzcorpus_callosum.gz
cortex_of_kidneycortex_of_kidney_top.gzcortex_of_kidney.gz
cortical_layer_iiicortical_layer_iii_top.gzcortical_layer_iii.gz
cortical_layer_iicortical_layer_ii_top.gzcortical_layer_ii.gz
cortical_layer_ivcortical_layer_iv_top.gzcortical_layer_iv.gz
cortical_layer_vicortical_layer_vi_top.gzcortical_layer_vi.gz
cortical_layer_vcortical_layer_v_top.gzcortical_layer_v.gz
cranial_ganglioncranial_ganglion_top.gzcranial_ganglion.gz
dentate_gyrus_granule_cell_layerdentate_gyrus_granule_cell_layer_top.gzdentate_gyrus_granule_cell_layer.gz
dentate_gyrus_of_hippocampal_formationdentate_gyrus_of_hippocampal_formation_top.gzdentate_gyrus_of_hippocampal_formation.gz
descending_colondescending_colon_top.gzdescending_colon.gz
diencephalondiencephalon_top.gzdiencephalon.gz
digestive_tractdigestive_tract_top.gzdigestive_tract.gz
dorsal_plus_ventral_thalamusdorsal_plus_ventral_thalamus_top.gzdorsal_plus_ventral_thalamus.gz
dorsal_root_gangliondorsal_root_ganglion_top.gzdorsal_root_ganglion.gz
dorsal_thalamusdorsal_thalamus_top.gzdorsal_thalamus.gz
duodenumduodenum_top.gzduodenum.gz
earear_top.gzear.gz
ejaculatory_duct_epitheliumejaculatory_duct_epithelium_top.gzejaculatory_duct_epithelium.gz
ejaculatory_ductejaculatory_duct_top.gzejaculatory_duct.gz
epididymisepididymis_top.gzepididymis.gz
esophagusesophagus_top.gzesophagus.gz
facial_modiolusfacial_modiolus_top.gzfacial_modiolus.gz
female_gonadfemale_gonad_top.gzfemale_gonad.gz
femurfemur_top.gzfemur.gz
forebrainforebrain_top.gzforebrain.gz
fundus_of_stomachfundus_of_stomach_top.gzfundus_of_stomach.gz
gall_bladdergall_bladder_top.gzgall_bladder.gz
ganglionic_layer_of_retinaganglionic_layer_of_retina_top.gzganglionic_layer_of_retina.gz
glomerular_capsuleglomerular_capsule_top.gzglomerular_capsule.gz
gonadgonad_top.gzgonad.gz
granular_layer_of_cerebellar_cortexgranular_layer_of_cerebellar_cortex_top.gzgranular_layer_of_cerebellar_cortex.gz
habenulahabenula_top.gzhabenula.gz
hair_folliclehair_follicle_top.gzhair_follicle.gz
heartheart_top.gzheart.gz
hindbrainhindbrain_top.gzhindbrain.gz
hindlimb_stylopodhindlimb_stylopod_top.gzhindlimb_stylopod.gz
hindlimb_zeugopodhindlimb_zeugopod_top.gzhindlimb_zeugopod.gz
hippocampal_fieldhippocampal_field_top.gzhippocampal_field.gz
hippocampal_formationhippocampal_formation_top.gzhippocampal_formation.gz
hippocampus_pyramidal_layerhippocampus_pyramidal_layer_top.gzhippocampus_pyramidal_layer.gz
hippocampus_stratum_orienshippocampus_stratum_oriens_top.gzhippocampus_stratum_oriens.gz
hypothalamushypothalamus_top.gzhypothalamus.gz
ileumileum_top.gzileum.gz
incisor_toothincisor_tooth_top.gzincisor_tooth.gz
inferior_colliculusinferior_colliculus_top.gzinferior_colliculus.gz
inner_medulla_of_kidneyinner_medulla_of_kidney_top.gzinner_medulla_of_kidney.gz
inner_nuclear_layer_of_retinainner_nuclear_layer_of_retina_top.gzinner_nuclear_layer_of_retina.gz
inner_renal_medulla_collecting_ductinner_renal_medulla_collecting_duct_top.gzinner_renal_medulla_collecting_duct.gz
integumentintegument_top.gzintegument.gz
internal_earinternal_ear_top.gzinternal_ear.gz
intestineintestine_top.gzintestine.gz
irisiris_top.gziris.gz
islet_of_langerhansislet_of_langerhans_top.gzislet_of_langerhans.gz
jaw_skeletonjaw_skeleton_top.gzjaw_skeleton.gz
jejunumjejunum_top.gzjejunum.gz
kidney_outer_medulla_outer_stripekidney_outer_medulla_outer_stripe_top.gzkidney_outer_medulla_outer_stripe.gz
kidneykidney_top.gzkidney.gz
lamina_propria_of_prostatic_urethralamina_propria_of_prostatic_urethra_top.gzlamina_propria_of_prostatic_urethra.gz
large_intestinelarge_intestine_top.gzlarge_intestine.gz
layer_of_neocortexlayer_of_neocortex_top.gzlayer_of_neocortex.gz
layer_of_retinalayer_of_retina_top.gzlayer_of_retina.gz
lens_of_camera-type_eyelens_of_camera-type_eye_top.gzlens_of_camera-type_eye.gz
liverliver_top.gzliver.gz
loop_of_henleloop_of_henle_top.gzloop_of_henle.gz
lower_digestive_tractlower_digestive_tract_top.gzlower_digestive_tract.gz
lower_jaw_molarlower_jaw_molar_top.gzlower_jaw_molar.gz
lunglung_top.gzlung.gz
lymph_nodelymph_node_top.gzlymph_node.gz
male_accessory_sex_glandmale_accessory_sex_gland_top.gzmale_accessory_sex_gland.gz
male_urethramale_urethra_top.gzmale_urethra.gz
mammary_glandmammary_gland_top.gzmammary_gland.gz
medial_habenular_nucleusmedial_habenular_nucleus_top.gzmedial_habenular_nucleus.gz
medulla_oblongatamedulla_oblongata_top.gzmedulla_oblongata.gz
medulla_of_thymusmedulla_of_thymus_top.gzmedulla_of_thymus.gz
meningeal_clustermeningeal_cluster_top.gzmeningeal_cluster.gz
midbrain_tectummidbrain_tectum_top.gzmidbrain_tectum.gz
midbrainmidbrain_top.gzmidbrain.gz
molar_toothmolar_tooth_top.gzmolar_tooth.gz
molecular_layer_of_cerebellar_cortexmolecular_layer_of_cerebellar_cortex_top.gzmolecular_layer_of_cerebellar_cortex.gz
mousemouse_top.gzmouse.gz
muscular_coat_of_seminal_vesiclemuscular_coat_of_seminal_vesicle_top.gzmuscular_coat_of_seminal_vesicle.gz
nasal_cavity_epitheliumnasal_cavity_epithelium_top.gznasal_cavity_epithelium.gz
nematode_pharynxnematode_pharynx_top.gznematode_pharynx.gz
neocortexneocortex_top.gzneocortex.gz
nephronnephron_top.gznephron.gz
nucleus_of_cerebellar_nuclear_complexnucleus_of_cerebellar_nuclear_complex_top.gznucleus_of_cerebellar_nuclear_complex.gz
olfactory_apparatusolfactory_apparatus_top.gzolfactory_apparatus.gz
olfactory_bulb_glomerular_layerolfactory_bulb_glomerular_layer_top.gzolfactory_bulb_glomerular_layer.gz
olfactory_bulb_granule_cell_layerolfactory_bulb_granule_cell_layer_top.gzolfactory_bulb_granule_cell_layer.gz
olfactory_bulb_mitral_cell_layerolfactory_bulb_mitral_cell_layer_top.gzolfactory_bulb_mitral_cell_layer.gz
olfactory_bulbolfactory_bulb_top.gzolfactory_bulb.gz
olfactory_epitheliumolfactory_epithelium_top.gzolfactory_epithelium.gz
osseus_labyrinth_vestibuleosseus_labyrinth_vestibule_top.gzosseus_labyrinth_vestibule.gz
outer_epitheliumouter_epithelium_top.gzouter_epithelium.gz
outer_medulla_of_kidneyouter_medulla_of_kidney_top.gzouter_medulla_of_kidney.gz
outer_medulla_outer_stripe_loop_of_henleouter_medulla_outer_stripe_loop_of_henle_top.gzouter_medulla_outer_stripe_loop_of_henle.gz
outer_nuclear_layer_of_retinaouter_nuclear_layer_of_retina_top.gzouter_nuclear_layer_of_retina.gz
ovarian_follicleovarian_follicle_top.gzovarian_follicle.gz
ovary_stratum_granulosumovary_stratum_granulosum_top.gzovary_stratum_granulosum.gz
oviductoviduct_top.gzoviduct.gz
pancreaspancreas_top.gzpancreas.gz
pancreatic_ductpancreatic_duct_top.gzpancreatic_duct.gz
pituitary_glandpituitary_gland_top.gzpituitary_gland.gz
placentaplacenta_top.gzplacenta.gz
ponspons_top.gzpons.gz
post-embryonic_organismpost-embryonic_organism_top.gzpost-embryonic_organism.gz
postnatal_subventricular_zonepostnatal_subventricular_zone_top.gzpostnatal_subventricular_zone.gz
primitive_nephronprimitive_nephron_top.gzprimitive_nephron.gz
principal_sensory_nucleus_of_trigeminal_nerveprincipal_sensory_nucleus_of_trigeminal_nerve_top.gzprincipal_sensory_nucleus_of_trigeminal_nerve.gz
prostate_epitheliumprostate_epithelium_top.gzprostate_epithelium.gz
prostate_gland_anterior_lobeprostate_gland_anterior_lobe_top.gzprostate_gland_anterior_lobe.gz
prostate_gland_dorsal_lobeprostate_gland_dorsal_lobe_top.gzprostate_gland_dorsal_lobe.gz
prostate_gland_dorsolateral_lobeprostate_gland_dorsolateral_lobe_top.gzprostate_gland_dorsolateral_lobe.gz
prostate_glandprostate_gland_top.gzprostate_gland.gz
prostate_gland_ventral_lobeprostate_gland_ventral_lobe_top.gzprostate_gland_ventral_lobe.gz
prostatic_urethraprostatic_urethra_top.gzprostatic_urethra.gz
proximal_tubuleproximal_tubule_top.gzproximal_tubule.gz
purkinje_cell_layer_of_cerebellar_cortexpurkinje_cell_layer_of_cerebellar_cortex_top.gzpurkinje_cell_layer_of_cerebellar_cortex.gz
pyloric_antrumpyloric_antrum_top.gzpyloric_antrum.gz
renal_corpusclerenal_corpuscle_top.gzrenal_corpuscle.gz
renal_cortex_tubulerenal_cortex_tubule_top.gzrenal_cortex_tubule.gz
renal_glomerulusrenal_glomerulus_top.gzrenal_glomerulus.gz
renal_medullarenal_medulla_top.gzrenal_medulla.gz
renal_tubulerenal_tubule_top.gzrenal_tubule.gz
retinal_neural_layerretinal_neural_layer_top.gzretinal_neural_layer.gz
retinaretina_top.gzretina.gz
saliva-secreting_glandsaliva-secreting_gland_top.gzsaliva-secreting_gland.gz
scala_mediascala_media_top.gzscala_media.gz
sciatic_nervesciatic_nerve_top.gzsciatic_nerve.gz
seminal_vesicle_epitheliumseminal_vesicle_epithelium_top.gzseminal_vesicle_epithelium.gz
seminal_vesicleseminal_vesicle_top.gzseminal_vesicle.gz
septum_of_telencephalonseptum_of_telencephalon_top.gzseptum_of_telencephalon.gz
skeletal_muscle_tissueskeletal_muscle_tissue_top.gzskeletal_muscle_tissue.gz
skeleton_of_lower_jawskeleton_of_lower_jaw_top.gzskeleton_of_lower_jaw.gz
small_intestinesmall_intestine_top.gzsmall_intestine.gz
smooth_muscle_tissuesmooth_muscle_tissue_top.gzsmooth_muscle_tissue.gz
spinal_cordspinal_cord_top.gzspinal_cord.gz
spiral_organ_of_cochleaspiral_organ_of_cochlea_top.gzspiral_organ_of_cochlea.gz
spleenspleen_top.gzspleen.gz
stomachstomach_top.gzstomach.gz
submandibular_glandsubmandibular_gland_top.gzsubmandibular_gland.gz
superior_colliculussuperior_colliculus_top.gzsuperior_colliculus.gz
sympathetic_ganglionsympathetic_ganglion_top.gzsympathetic_ganglion.gz
telencephalontelencephalon_top.gztelencephalon.gz
temporal_bonetemporal_bone_top.gztemporal_bone.gz
testistestis_top.gztestis.gz
thymusthymus_top.gzthymus.gz
tibialis_anteriortibialis_anterior_top.gztibialis_anterior.gz
tibiatibia_top.gztibia.gz
tonguetongue_top.gztongue.gz
urinary_bladderurinary_bladder_top.gzurinary_bladder.gz
uterine_cervixuterine_cervix_top.gzuterine_cervix.gz
uterusuterus_top.gzuterus.gz
utricle_of_membranous_labyrinthutricle_of_membranous_labyrinth_top.gzutricle_of_membranous_labyrinth.gz
vagus_x_ganglionvagus_x_ganglion_top.gzvagus_x_ganglion.gz
ventral_pancreatic_ductventral_pancreatic_duct_top.gzventral_pancreatic_duct.gz
ventricular_zoneventricular_zone_top.gzventricular_zone.gz
vermiform_appendixvermiform_appendix_top.gzvermiform_appendix.gz
vestibular_labyrinthvestibular_labyrinth_top.gzvestibular_labyrinth.gz
white_adipose_tissuewhite_adipose_tissue_top.gzwhite_adipose_tissue.gz
white_matter_of_cerebellumwhite_matter_of_cerebellum_top.gzwhite_matter_of_cerebellum.gz